bioinf

A list of essential commands and examples to use Docker...

During my PhD and postdoc, my main day-to-day was driven by one question: How do we make the best model protein structures? To answer that question, this is often done by calculating the root-mean square deviation (RMSD) between the predicted structure vs. the known ‘true’ protein structure. There are other measures (e.g. TM-score, GDT_TS), but RMSD is still the most intuitive, and (unfortunately?) the accepted standard metric for goodness-of-fit....